PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497899.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 301aa    MW: 31825.3 Da    PI: 9.9072
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07103128227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k ++C+ f     Ck+Gd+C+FaHg+
  XP_004497899.1 103 KSRICNKFNSAEGCKFGDKCHFAHGE 128
                     5689999999999***********96 PP

2zf-CCCH36.39.1e-12269292226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+lC +fa+ G C +G+rC+FaHg
  XP_004497899.1 269 KTKLCENFAK-GSCTFGERCHFAHG 292
                     8*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.53461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.8363462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-73659IPR000571Zinc finger, CCCH-type
PfamPF146082.43959No hitNo description
Gene3DG3DSA:4.10.1000.104.6E-1399132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7100132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.011103128IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.103.3E-15172241IPR004088K Homology domain, type 1
SMARTSM003227.6E-11172242IPR004087K Homology domain
PROSITE profilePS5008413.837173237IPR004088K Homology domain, type 1
PfamPF000133.1E-10175238IPR004088K Homology domain, type 1
SuperFamilySSF547911.15E-13175269IPR004088K Homology domain, type 1
CDDcd001059.52E-14175238No hitNo description
Gene3DG3DSA:4.10.1000.109.4E-16262298IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6267293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8267297IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9269292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDVRKRGRLE ATVNVNGSFK KNKQEMDLLS SGVGSKSKPC TKFFSIAGCP FGEGCHFLHY  60
VPGGYNAVAQ MMNLKSSAAP QLSRNVVAPP PVANNGSAPS AVKSRICNKF NSAEGCKFGD  120
KCHFAHGEWE LGKPFAPSID DHHRPMAPIT VGRVPGRIEA PSGLAATTSF GVNSTAKISV  180
EASLAGAIIG KGGVHSKQIC RQTGVKFSIR DHESDPNLRN IELEGTFDQI AQASNMVKDL  240
LLTLSASAPP KSNSGVPGSG PPPPGRNIKT KLCENFAKGS CTFGERCHFA HGASELRKLG  300
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497899.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-104C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A072VIQ31e-173A0A072VIQ3_MEDTR; Uncharacterized protein
STRINGGLYMA19G32910.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-82C3H family protein